vela

Workbench · walkthrough · vela@0.103.0

Trace one record through the loop

packet → proposal → diff → review → event → proof → impact · vf_9a4c5010e77212f3

The BBB child frontier carries 276 review-readiness blockers. This page traces one of them through the seven steps that turn external activity into reviewable frontier state. The record is bounded human BBB-biomarker evidence; nothing here is a scientific conclusion about therapy.

step 1 · packet

The artifact that arrived

Each curation candidate enters Vela as source material, not truth. For this record, the source is a registered Phase II trial readout. The frontier records its locator, scope, and provenance separately from the finding's assertion.

source id
vs_389ee6e7b8c090d0
title
TRAILBLAZER-ALZ Phase II (NCT03367403, Eli Lilly, Phase II): Established proof-of-concept for donanemab and introduced tau-based patient stratification.
locator
doi:10.1056/NEJMoa2105073
doi
10.1056/NEJMoa2105073
step 2 · proposal

The change being proposed

A mechanical curation pass spotted that the evidence atom attached to this finding had no locator, while the parent source already carried a stable identifier. The agent emitted one proposal of kind evidence_atom.locator_repair, asking to copy the identifier down to the atom.

proposal id
vpr_05116687194cef48
kind
evidence_atom.locator_repair
actor
agent:vela-curation-bot-2026-05-08
created
2026-05-08T13:20:28.519685+00:00
reason
Mechanical evidence-atom locator repair derived from the parent source record. The source's locator is canonical; this proposal copies the value down so the atom carries an inspectable pointer.
step 3 · diff

What the proposal would change

before
{
  "id": "vea_0f0583c879503cf2",
  "source_id": "vs_389ee6e7b8c090d0",
  "finding_id": "vf_9a4c5010e77212f3",
  "locator": null,
  "caveats": [
    "missing evidence locator"
  ]
}
after
{
  "id": "vea_0f0583c879503cf2",
  "source_id": "vs_389ee6e7b8c090d0",
  "finding_id": "vf_9a4c5010e77212f3",
  "locator": "doi:10.1056/NEJMoa2105073",
  "caveats": []
}

The repair touches one field on one evidence atom. It does not change the finding's assertion, confidence, or human-review state. That is the substrate property the doctrine guards.

step 4 · review

The reviewer decision

Mechanical proposals (locator-only, identifier prefix doi:, pmid:, nct:, pmc:, openalex:) auto-accept. Anything that touches assertion text, confidence, evidence-span text, or human-review state stays queued for a human reviewer.

status
applied
reviewer
agent:vela-curation-bot-2026-05-08
reviewed at
2026-05-08T13:20:28.541040+00:00
step 5 · event

The signed canonical event

The accepted proposal lands as one canonical event in .vela/events/. The event hash chains from the atom's pre-repair canonical bytes to its post-repair canonical bytes, so a chain validator can confirm exactly the named atom changed and exactly the named repair was applied.

event id
vev_4a0f740b34440e9c
kind
evidence_atom.locator_repaired
target
evidence_atom · vea_0f0583c87950…
actor
agent:vela-curation-bot-2026-05-08
timestamp
2026-05-08T13:20:28.541058+00:00
before_hash
sha256:…3f6201cd
after_hash
sha256:…dcca19b9
step 6 · proof

Where the change lands in the proof packet

After acceptance, vela frontier materialize regenerates frontier.json, vela.lock, and the proof artifacts under proof/. The proof packet records the post-repair event log and snapshot hashes; a fresh clone can replay the chain and arrive at the same materialized state.

./target/release/vela proof verify projects/alzheimers-bbb-dysfunction-delivery --json

The proof's event_log_hash commits to all 545 accepted events on the BBB frontier, including the 200 locator repairs landed in this curation wave.

step 7 · impact

What depends on this finding

The finding now carries a stable source pointer. A reader running vela impact against this finding sees the downstream dependents declared by typed links: which other findings cite, depend on, or contradict this one. Impact reports stay read-only and do not propagate confidence automatically.

./target/release/vela impact projects/alzheimers-bbb-dysfunction-delivery vf_9a4c5010e77212f3 --json

If this finding's confidence weakens later, the same impact traversal tells a reviewer which downstream records to audit. Vela records dependency-aware state. It does not settle Alzheimer biology, recommend treatment, or convert agent confidence to truth.

Impact reports on the BBB frontier

Twenty-five typed dependency links have been declared across the BBB accepted-core findings (Block A4). Eight impact reports are committed under projects/alzheimers-bbb-dysfunction-delivery/exports/impact/; each shows what supports, depends on, or contradicts a single accepted-core finding through the typed-link graph.

  • vf_4b7f1b77d9783c58 1 direct 1 total downstream 2 events supports

    Safety profiles of lecanemab: A systematic review and meta-analysis of randomized controlled trials and real-world evidence. — BackgroundSafety profiles of leca

  • vf_8108c9642038749a 2 direct 7 total downstream 2 events supports

    Interactive effects of blood-brain barrier breakdown and Alzheimer's disease biomarker status on cognitive decline in older adults without dementia. — Introduct

  • vf_9bf64b2a67b97f51 3 direct 3 total downstream 2 events supports

    Focused ultrasound and Alzheimer's disease A systematic review.

  • vf_a0f9919e6d163b8d 1 direct 2 total downstream 2 events supports

    Reducing anti-TfR antibody affinity for transferrin receptor enhances receptor-mediated transcytosis and brain uptake; bispecific anti-TfR/BACE1 antibody lowers

  • vf_a9e324457a7a027a 2 direct 8 total downstream 2 events supports

    Efficacy and <i>APOE</i> ε4-stratified risk of donanemab in Alzheimer's disease: A systematic review and meta-analysis of randomized clinical trials

  • vf_ba4f834d6dc506d1 2 direct 2 total downstream 3 events supports

    APOE4 carriers show accelerated, BBB-specific dysfunction predicting cognitive decline; the broader pericyte-loss/BBB-breakdown narrative is concentrated in APO

  • vf_c8730c33b092abbe 1 direct 4 total downstream 2 events supports

    The glymphatic system clears amyloid beta and tau from brain to plasma in humans. — Dysfunction of the glymphatic system has been proposed as a mechanistic link

  • vf_dd4a7ec9ef34cf1c 2 direct 4 total downstream 2 events supports

    DCE-MRI in a large aging cohort demonstrates that hippocampal and parahippocampal BBB permeability is elevated in cognitively impaired individuals and correlate

Reproduce locally with ./scripts/build-bbb-impact-examples.sh.

Impact reports on the anti-amyloid frontier

The anti-amyloid translation frontier (vfr_5076e7b3ff8e6b0f) carries reviewer-declared supports, depends, contradicts, and replicates links between accepted findings. Eight more impact reports are committed under projects/anti-amyloid-translation/exports/impact/.

  • vf_03875dbe6be66b00 2 direct 2 total downstream 5 events supports

    Verubecestat failed to improve cognition or function in mild-to-moderate Alzheimer's disease despite BACE1 target engagement.

  • vf_0767356cc73a6387 0 direct 0 total downstream 2 events

    Lanabecestat phase 3 trials were stopped for futility, adding class-level pressure against broad BACE1 inhibition as an Alzheimer's disease treatment strategy.

  • vf_29671540d388fc5d 0 direct 0 total downstream 5 events

    The minimum clinically important difference for CDR-SB in early Alzheimer's disease remains a decision-critical threshold for interpreting anti-amyloid trial ef

  • vf_3d75299a343a2fc8 0 direct 0 total downstream 2 events

    Atabecestat development was halted after liver toxicity signals, separating BACE1 target engagement from acceptable translational safety.

  • vf_6aff53d375659bcf 1 direct 1 total downstream 4 events depends

    Anti-amyloid programs can produce large amyloid biomarker changes while producing modest, absent, or discordant cognitive effects.

  • vf_7b4bfdf919b22af5 3 direct 3 total downstream 4 events contradicts, depends

    Donanemab slowed clinical decline in early symptomatic Alzheimer's disease in TRAILBLAZER-ALZ 2, with efficacy interpreted against amyloid and tau-selection cri

  • vf_9ded3333a52f3e58 5 direct 11 total downstream 4 events contradicts, depends, supports

    Lecanemab slowed decline on CDR-SB in early Alzheimer's disease in CLARITY AD, with a modest absolute effect that requires patient-level risk stratification.

  • vf_afddbeabc19efa09 3 direct 6 total downstream 3 events contradicts, depends, supports

    Lecanemab reduced amyloid burden and shifted downstream biomarkers in CLARITY AD, but biomarker movement remained larger than the observed clinical effect.

Reproduce with ./scripts/build-anti-amyloid-impact-examples.sh.

parallel example · early-AD biomarker calibration

Parallel example: early-AD biomarker calibration

The same seven steps drive a different frontier. The early-AD biomarker calibration frontier (vfr_a22c9022674a2304) carries eight reviewer-grade draft findings calibrated against the anti-amyloid translation MCID anchor. One of them, the donanemab CDR-SB effect from TRAILBLAZER-ALZ 2, runs the same loop end to end. Nothing here is a clinical recommendation; it is a record of state that a reviewer can audit.

step 1 · packet

source id
vs_2c5a3d3bd78a01d4
title
Donanemab in Early Symptomatic Alzheimer Disease: TRAILBLAZER-ALZ 2 (Sims et al., JAMA 2023)
locator
doi:10.1001/jama.2023.13239
doi
10.1001/jama.2023.13239

step 2 · proposal

A reviewer-grade manual deposit. Unlike the BBB locator repair, this proposal touches assertion text, so it does not auto-accept; the curation bot applies it locally with the --apply flag and the proposal carries a caveat that evidence review is still required.

proposal id
vpr_c322c1e3251c7878
kind
finding.add
actor
agent:vela-curation-bot-2026-05-09
created
2026-05-08T21:47:17.953594+00:00
reason
Manual finding added to frontier state

step 3 · diff

before
{
  "id": "vf_1731753d816fb7d0",
  "status": "absent",
  "assertion": null,
  "evidence": null
}
after
{
  "id": "vf_1731753d816fb7d0",
  "assertion": "In TRAILBLAZER-ALZ 2, donanemab slowed CDR-SB progression by 0.67 points at 76 weeks vs placebo in early symptomatic Alzheimer disease participants with low or medium tau pathology (CDR-SB difference -0.67, 95% CI -0.95 to -0.40, P<.001).",
  "evidence_span": {
    "section": "abstract",
    "text": "LSM change in CDR-SB score at 76 weeks was 1.20 (95% CI, 1.00-1.41) with donanemab and 1.88 (95% CI, 1.68-2.08) with placebo (difference, -0.67 [95% CI, -0.95 to -0.40]; P < .001) in the low/medium tau population"
  },
  "confidence": { "score": 0.7, "basis": "operator-supplied frontier prior; review required" }
}

The finding lands with one verbatim evidence span quoted from the JAMA abstract, plus a typed depends link to vf_29671540d388fc5d@vfr_5076e7b3ff8e6b0f on the anti-amyloid translation frontier. The link is the calibration: this CDR-SB effect is read in reference to a separately declared MCID anchor.

step 4 · review

The proposal is applied locally on creation, but the finding carries a caveat: Manual findings require evidence review before scientific use. The review queue keeps the record visible until a reviewer-grade verdict is appended.

status
applied
reviewer
agent:vela-curation-bot-2026-05-09
reviewed at
2026-05-08T21:47:17.962115+00:00

step 5 · event

The accepted proposal lands as one finding.asserted canonical event. The full finding payload travels inline so a fresh replay_from_genesis reconstructs the finding from the event log alone.

event id
vev_2c19f1a5bd7801b8
kind
finding.asserted
target
finding · vf_1731753d816fb…
actor
agent:vela-curation-bot-2026-05-09
timestamp
2026-05-08T21:47:17.962115+00:00
before_hash
sha256:…256:null
after_hash
sha256:…d9a82b1d

step 6 · proof

After acceptance, the same materialize step regenerates the early-AD frontier's frontier.json, vela.lock, and proof packet. The proof's event_log_hash commits to the full accepted-event history including this manual deposit.

./target/release/vela proof verify projects/early-ad-biomarker-calibration --json
frontier id
vfr_a22c9022674a2304
snapshot_hash
sha256:…df8e0070
event_log_hash
sha256:…e27e3324
proof_freshness
fresh

step 7 · impact

The donanemab finding has no declared downstream dependents on this frontier; it is itself the dependent, calibrated against an upstream MCID anchor on the anti-amyloid translation frontier. The cross-frontier depends link makes that relationship inspectable: a reader running vela impact on the upstream anchor sees this finding listed.

./target/release/vela impact projects/early-ad-biomarker-calibration vf_1731753d816fb7d0 --json
direct dependents
0
total downstream
0
accepted events
1
cross-frontier link
depends → vf_29671540d388fc5d@vfr_5076e7b3ff8e6b0f

Same shape, different domain. Two frontiers, one substrate contract: every state change is a proposal, every accepted proposal is one canonical event, every event is replay-checkable from the proof packet.

One record. Seven steps. Zero silent edits. Across v0.56 and v0.57 the same path carried 245 evidence-atom locator repairs, 9 cascade-mechanical span repairs, 25 reviewer-declared typed dependency links, and 212 entity resolutions against canonical biological databases. Three new event kinds entered the kernel: evidence_atom.locator_repaired, finding.span_repaired, and finding.entity_resolved. The remaining queues (236 missing-span findings, 90 unresolvable entity records, 42 findings with one or more entities outside the resolution table) stay visible in the review-debt strip on /frontiers/alzheimers-bbb. Activity is not state. The substrate keeps the distinction visible.